Publications


Drafts / Under Review
Conference and Workshop Papers
Journal Publications
Standards, White Papers, Technical Reports
Book Chapters
BibTeX




Drafts / Under Review

These publications are work in progress, are under review, or are not yet published for other reasons. As such, they are likely to change, sometimes significantly, and should not (yet) be referenced directly. Please contact the repective authors for further details.


Executing Dynamic and Heterogeneous Workloads on Super Computers
Andre Merzky, Mark Santcroos, Matteo Turilli, Shantenu Jha
2016
(under review)
[link] [bib] : radicalpilot


A Comprehensive Perspective on Pilot-Jobs
Matteo Turilli, Mark Santcroos, Shantenu Jha
Under Review, 2016
(under review)
[link] [bib] : pilotreview


Pilot-Abstraction: A Valid Abstraction for Data-Intensive Application on HPC, Hadoop and Cloud Infrastructures?
Andre Luckow, Ioannis Paraskevakos, Shantenu Jha
The 24th International ACM Symposium on High Performance Distributed Computing, 2015
[link] [pdf] [bib] : 2015-hpdc


Introducing Distributed Dynamic Data-intensive (D3) Science: Understanding Applications and Infrastructure
Shantenu Jha, Daniel S. Katz, Neil Chue Hong, Andre Luckow, Omer Rana, Yogesh Simmhan
2015
[pdf] [bib] : 3dpas_intro


Analysis of Distributed Execution of Workloads
Matteo Turilli, Yadu Nand Babuji, Andre Merzky, Ming Tai Ha, Michael Wilde, Daniel S. Katz, Shantenu Jha
2016
[link] [bib] : turilli2016analysis


A Building Blocks Approach towards Domain Specific Workflow Systems?
Shantenu Jha, Matteo Turilli
2016
[link] [bib] : workflows2016



Conference and Workshop Papers

2016


ExTASY: Scalable and Flexible Coupling of MD Simulations and Advanced Sampling Techniques
Vivekanandan Balasubramanian, Iain Bethune, Ardita Shkurti, Elena Breitmoser, Eugen Hruska, Cecilia Clementi, Charles Laughton, Shantenu Jha
IEEE International Conference on eScience, 2016
[link] [pdf] [bib] : extasy-2016


RepEx: A Flexible Framework for Scalable Replica Exchange Molecular Dynamics Simulations
Antons Treikalis, Andre Merzky, Haoyuan Chen, Tai-Sung Lee, Darrin M. York, Shantenu Jha
Proceedings of the 45th International Conference on Parallel Processing (ICPP), 2016
[link] [bib] : repex-icpp-2016


Ensemble Toolkit: Scalable and Flexible Execution of Ensembles of Tasks
Vivek Balasubramanian, Antons Trekalis, Ole Weidner, Shantenu Jha
Proceedings of the 45th International Conference on Parallel Processing (ICPP), 2016
[link] [bib] : entk-icpp-2016


Integrating Abstractions to Enhance the Execution of Distributed Applications
Matteo Turilli, Feng (Francis) Liu, Zhao Zhang, Andre Merzky, Michael Wilde, Jon Weissman, Daniel S. Katz, Shantenu Jha
Proceedings of 30th IEEE International Parallel and Distributed Processing Symposium (IPDPS), 2016
[link] [bib] : aimes-ipdps-2016


Synapse: Synthetic Application Profiler and Emulator
Andre Merzky, Shantenu Jha
Parallel and Distributed Scientific and Engineering Computing Workshop, 2016
under review
[link] [bib] : synapse_wrap


Hadoop on HPC: Integrating Hadoop and Pilot-based Dynamic Resource Management
Andre Luckow, Ioannis Paraskevakos, George Chantzialexiou, Shantenu Jha
Workshop on High-Performance Big Data Computing, 2016
[link] [bib] : hadoop-on-hpc


Executing dynamic heterogeneous workloads on Blue Waters with RADICAL-Pilot
Mark Santcroos, Ralph Castain, Andre Merzky, Iain Bethune, Shantenu Jha
Cray User Group 2016, 2016
[link] [bib] : cug-2016

2014


A Tale of Two Data-Intensive Paradigms: Applications, Abstractions, and Architectures
Shantenu Jha, Judy Qiu, Andre Luckow, Pradeep Mantha, Geoffrey C.Fox
Big Data (BigData Congress), 2014 IEEE International Congress on, 2014
[pdf] [bib] : tale-of-two-ieee-2014

2013


A Framework for Flexible and Scalable Replica-Exchange on Production Distributed CI
Brian K. Radak, Melissa Romanus, Emilio Gallicchio, Tai-Sung Lee, Ole Weidner, Nan-Jie Deng, Peng He, Wei Dai, Darrin M. York, Ronald M. Levy, Shantenu Jha
Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery, 2013
[link] [pdf] [bib] : 2013-xsede-cdi


Scalable Online Comparative Genomics of Mononucleosomes: A BigJob
Jack Smith, Melissa Romanus, James Solow, Pradeep Kumar Mantha, Yaakoub El Khamra, Thomas C. Bishop, Shantenu Jha
Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery, 2013
[link] [pdf] [bib] : 2013-xsede-hthpc


Exploring Dynamic Enactment of Scientific Workflows using Pilot-Abstractions
Mark Santcroos, Barbera DC van Schaik, Shayan Shahand, Silvia Delgado Olabarriaga, Andre Luckow, Shantenu Jha
13th IEEE/ACM International Conference on Cluster, Cloud and Grid Computing, 2013
[pdf] [bib] : ccgrid13-pilotdata

2012


P*: A model of pilot-abstractions
Andre Luckow, Mark Santcroos, Andre Merzky, Ole Weidner, Pradeep Mantha, Shantenu Jha
IEEE 8th International Conference on e-Science, 2012
[link] [pdf] [bib] : pstar12


Pilot abstractions for compute, data, and network
Mark Santcroos, Silvia Delgado Olabarriaga, Daniel S. Katz, Shantenu Jha
2012 IEEE 8th International Conference on E-Science, 2012
[pdf] [bib] : pstar-network12


Pilot-MapReduce: an extensible and flexible MapReduce implementation for distributed data
Pradeep Kumar Mantha, Andre Luckow, Shantenu Jha
Proceedings of third international workshop on MapReduce and its Applications, 2012
[pdf] [bib] : pilot-mapreduce2012


Understanding MapReduce-based Next-Generation Sequencing Alignment on Distributed Cyberinfrastructure
Pradeep Mantha, Nayong Kim, Joohyun Kim, Andre Luckow, Shantenu Jha
3rd International Workshop on Emerging Methods in Computational Life Sciences, Proceedings of the 21st International Symposium on High-Performance Parallel and Distributed Computing, HPDC’12, June 2012
[pdf] [bib] : pmr-ecmls12


Towards a common model for pilot-jobs
Andre Luckow, Mark Santcroos, Ole Weidner, Andre Merzky, Sharath Maddineni, Shantenu Jha
Proceedings of the 21st International Symposium on High-Performance Parallel and Distributed Computing,HPDC’12, June 2012
[link] [bib] : pilotjob-hpdc


Running many Molecular Dynamics Simulations on many Supercomputers
Rajib Mukherjee, Abhinav Thota, Hideki Fujioka, Thomas C. Bishop, Shantenu Jha
Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the Campus and Beyond, 2012
[pdf] [bib] : xsede12_ensemble


The Anatomy of Successful ECSS Projects: Lessons of supporting High-Throughput High-Performance Ensembles on XSEDE
Melissa Romanus, Pradeep Kumar Mantha, Matt McKenzie, Thomas C. Bishop, Emilio Gallichio, Andre Merzky, Yaakoub El Khamra, Shantenu Jha
Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the Campus and Beyond, 2012
[pdf] [bib] : Romanus:2012:ASE:2335755.2335843

2011


Towards high-throughput, high-performance computational estimation of binding affinities for patient specific HIV-1 protease sequences
Owain Kenway, David W. Wright, Helmut Heller, Andre Merzky, Gavin Pringle, Jules Wolfrat, Peter Coveney, Shantenu Jha
Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery, 2011
[link] [bib] : tg-vph-interop


Building Gateways for Life-Science Applications using the Dynamic Application Runtime Environment (DARE) Framework
Joohyun Kim, Sharath Maddineni, Shantenu Jha
Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery, 2011
[link] [bib] : dare-tg11


Characterizing deep sequencing analytics using BFAST: towards a scalable distributed architecture for next-generation sequencing data
Joohyun Kim, Sharath Maddineni, Shantenu Jha
Proceedings of the second international workshop on Emerging computational methods for the life sciences, 2011
[link] [bib] : dare-ecmls11


Using the TeraGrid to teach Scientific Computing
Frank L”offler, Gabrielle Allen, Werner Benger, Andrei Hutanu, Shantenu Jha, Erik Schnetter
Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery, 2011
[pdf] [bib] : saga-teach-fg10

2010


Abstractions for Loosely-Coupled and Ensemble-Based Simulations on Azure
Andre Luckow, Shantenu Jha
International IEEE Conference on Cloud Computing Technology and Science, 2010
[pdf] [bib] : bigjob_cloudcom10


What Is the Price of Simplicity? — A Cross-Platform Evaluation of the SAGA API
Mathijs Den Burger, Ceriel Jacobs, Thilo Kielmann, Andre Merzky, Ole Weidner, Hartmut Kaiser
Proceedings of the 16th international Euro-Par conference on Parallel processing: Part I, 2010
[pdf] [bib] : saga_europar10


Modelling data-driven CO2 sequestration using distributed HPC cyberinfrastructure
Yaakoub El-Khamra, Shantenu Jha, Christopher D. White
Proceedings of the 2010 TeraGrid Conference, 2010
[pdf] [bib] : co2-tg10


Efficient Runtime Environment for Coupled Multi-physics Simulations: Dynamic Resource Allocation and Load-Balancing
Soon-Heum Ko, Nayong Kim, Joohyun Kim, Abhinav Thota, Shantenu Jha
Proceedings of the 2010 10th IEEE/ACM International Conference on Cluster, Cloud and Grid Computing, 2010
[pdf] [bib] : ko-efficient


Exploring the RNA folding energy landscape using scalable distributed cyberinfrastructure
Joohyun Kim, Wei Huang, Sharath Maddineni, Fareed Aboul-Ela, Shantenu Jha
Emerging Computational Methods in the Life Sciences, Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing, 2010
[pdf] [bib] : ecmls_ccpe10


SAGA BigJob: An Extensible and Interoperable Pilot-Job Abstraction for Distributed Applications and Systems
Andre Luckow, Lukas Lacinski, Shantenu Jha
The 10th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, 2010
[pdf] [bib] : saga_bigjob_condor_cloud

2009


Application Level Interoperability between Clouds and Grids
Andre Merzky, Katerina Stamou, Shantenu Jha
Proceedings of the IEEE Grid and Pervasive Computing Conference ’09, 2009
[link] [bib] : 10.1109.GPC.2009.17


A Fresh Perspective on Developing and Executing DAG-Based Distributed Applications: A Case-Study of SAGA-Based Montage
Andre Merzky, Katerina Stamou, Shantenu Jha, Daniel S. Katz
Proceedings of the 2009 Fifth IEEE International Conference on e-Science, 2009
[pdf] [bib] : merzky-fresh


Developing Autonomic Distributed Scientific Applications: A Case Study From History Matching Using Ensemble Kalman-Filters
Yaakoub El-Khamra, Shantenu Jha
GMAC ’09: Proceedings of the 6th International Conference Industry Session on Grids meets Autonomic Computing, 2009
[link] [bib] : gmac09


Adaptive Distributed Replica–Exchange Simulations
Andre Luckow, Shantenu Jha, Joohyun Kim, Andre Merzky, Bettina Schnor
Theme Issue of the Philosophical Transactions of the Royal Society A: Crossing Boundaries: Computational Science, E-Science and Global E-Infrastructure Proceedings of the UK e-Science All Hands Meeting, vol. 367, 2009
[pdf] [bib] : luckow2009adaptive


Developing Scientific Applications with Loosely-Coupled Sub-tasks
Shantenu Jha, Yaakoub El-Khamra, Joohyun Kim
Proceedings of the 9th International Conference on Computational Science: Part I, 2009
[pdf] [bib] : jha2009developing


Programming Abstractions for Data Intensive Computing on Clouds and Grids
Chris Miceli, Michael Miceli, Shantenu Jha, Hartmut Kaiser, Andre Merzky
Cluster Computing and the Grid, 2009. CCGRID ’09. 9th IEEE/ACM International Symposium on, May 2009
[pdf] [bib] : saga_data_intensive_abstractions


Critical Perspectives on Large-Scale Distributed Applications and Production Grids (Best Paper Award)
Shantenu Jha, Daniel S. Katz, Manish Parashar, Omer Rana, Jon B. Weissman
The 10th IEEE/ACM Conference on Grid Computing 2009, 2009
[pdf] [bib] : dpagrid2009


Modelling Data-Driven CO$_2$ Sequestration Using Distributed HPC CyberInfrastructure
Yaakoub El-Khamra, Shantenu Jha
Microsoft Research eScience Workshop, Pittsburgh, 2009
[link] [pdf] [bib] : co2_escience2009

2008


Developing Large-Scale Adaptive Scientific Applications with Hard to Predict Runtime Resource Requirements
Shantenu Jha, Yaakoub El-Khamra, Hartmut Kaiser, Ole Weidner, Andre Merzky
Proceedings of TeraGrid08, 2008
[bib] : saga_tg08


Distributed Replica-Exchange Simulations on Production Environments Using SAGA and Migol
Andre Luckow, Shantenu Jha, Joohyun Kim, Andre Merzky, Bettina Schnor
Proceedings of the 2008 Fourth IEEE International Conference on eScience, 2008
[link] [bib] : Luckow:2008la

2007


Design and Implementation of Network Performance Aware Applications Using SAGA and Cactus
Shantenu Jha, Hartmut Kaiser, Yaakoub El-Khamra, Ole Weidner
E-SCIENCE ’07: Proceedings of the Third IEEE International Conference on e-Science and Grid Computing, 2007
[pdf] [bib] : escience07


Grid Interoperability at the Application Level Using SAGA
Shantenu Jha, Hartmut Kaiser, Andre Merzky, Ole Weidner
E-SCIENCE ’07: Proceedings of the Third IEEE International Conference on e-Science and Grid Computing (e-Science 2007), 2007
[pdf] [bib] : saga_gin

2005


GRID SuperScalar and SAGA: forming a high-level and platform-independent Grid Programming Environment
Raoul Sirvent, Andre Merzky, Rosa M. Badia, Thilo Kielmann
CoreGRID Integration WorkShop, 2005
[pdf] [bib] : sirvent2005grid



Journal Publications

2016


On the complexities of utilizing large-scale lightpath-connected distributed cyberinfrastructure
Jason Maassen, Ben van Werkhoven, Maarten van Meersbergen, Henri E. Bal, Michael Kliphuis, Sandra E. Brunnabend, Henk A. Dijkstra, Gerben van Malenstein, Migiel de Vos, Sylvia Kuijpers, Sander Boele, Jules Wolfrat, Nick Hill, David Wallom, Christian Grimm, Dieter Kranzlmüller, Dinesh Ganpathi, Shantenu Jha, Yaakoub El Khamra, Frank O. Bryan, Benjamin Kirtman, Frank J. Seinstra
Concurrency and Computation: Practice and Experience, 2016
[pdf] [bib] : ccpe-2016-error

2015


Application skeletons: Construction and use in eScience
Daniel S. Katz, Andre Merzky, Zhao Zhang, Shantenu Jha
Future Generation Computer Systems , 2015
[link] [pdf] [bib] : skeleton-synapse15


SAGA: A Standardized Access Layer to Heterogeneous Distributed Computing Infrastructure
Andre Merzky, Ole Weidner, Shantenu Jha
Software-X, 2015
DOI: 10.1016/j.softx.2015.03.001
[pdf] [bib] : saga-x


Characterization of the Three-Dimensional Free Energy Manifold for the Uracil Ribonucleoside from Asynchronous Replica Exchange Simulations
Brian K. Radak, Melissa Romanus, Tai-Sung Lee, Haoyuan Chen, Ming Huang, Antons Treikalis, Vivekanandan Balasubramanian, Shantenu Jha, Darrin M. York
Journal of Chemical Theory and Computation, vol. 11 # 2, 2015
[link] [pdf] [bib] : ct500776j


Next Generation Workload Management System For Big Data on Heterogeneous Distributed Compu ting
A Klimentov, P Buncic, K De, S Jha, T Maeno, R Mount, P Nilsson, D Oleynik, S Panitkin, A Petrosyan, R J Porter, K F Read, A Vaniachine, J C Wells, T Wenaus
Journal of Physics: Conference Series, vol. 608 # 1, 2015
[pdf] [bib] : titan-panda

2014


Towards Standardized Job Submission and Control in Infrastructure Clouds
Peter Tröger, Andre Merzky
Journal of Grid Computing, vol. 12 # 1, March 2014
[link] [pdf] [bib] : drmaaocci-jogc-2014


Pilot-Data: An Abstraction for Distributed Data
Andre Luckow, Mark Santcroos, Ashley Zebrowski, Shantenu Jha
Journal Parallel and Distributed Computing, October 2014
[link] [pdf] [bib] : pilot-data-jpdc-2014


Developing eThread Pipeline Using SAGA- Pilot Abstraction for Large-Scale Structural Bioinformatics
Anjani Ragothaman, Sairam Chowdary Boddu, Nayong Kim, Wei Feinstein, Michal Brylinski, Shantenu Jha, Joohyun Kim
BioMed Research International, vol. 2014, 2014
[pdf] [bib] : ethread-biomed-2014


Comparative analysis of nucleotide translocation through protein nanopores using steered molecular dynamics and an adaptive biasing force
Hugh S. C. Martin, Shantenu Jha, Peter V.Coveney
Computational Chemistry, vol. 35 # 9, April 2014
[link] [pdf] [bib] : nanopore-jcc-2014


Computing Clinically Relevant Binding Free Energies of HIV-1 Protease Inhibitors
David W. Wright, Benjamin A. Hall, Owain A. Kenway, Shantenu Jha, Peter V. Coveney
Chemical Theory and Computation, vol. 10 # 3, 2014
[pdf] [bib] : bfe-jctc-2014


Numerical Experiments of Solving Moderate-velocity Flow Field Using a Hybrid Computational Fluid Dynamics Molecular Dynamics Approach
Soon-Heum Ko, Nayong Kim, Shantenu Jha, Dimitris E. Nikitopoulos, Dorel Moldovan
Mechanical Science and Technology, vol. 1 # 28, 2014
[pdf] [bib] : cfd-multiscale-2014

2012


Distributed computing practice for large-scale science and engineering applications
Jha, Shantenu, Cole, Murray, Katz, Daniel S., Parashar, Manish, Rana, Omer, Weissman, Jon
Concurrency and Computation: Practice and Experience, vol. 25 # 11, 2013
[link] [pdf] [bib] : dpa_surveypaper


Distributed Application Runtime Environment (DARE): A Standards-based Middleware Framework for Science-Gateways
Maddineni, Sharath, Kim, Joohyun, El-Khamra, Yaakoub, Jha, Shantenu
J. Grid Comput., vol. 10 # 4, December 2012
[pdf] [bib] : jogc-2012-dare


Advancing next-generation sequencing data analytics with scalable distributed infrastructure
Kim, Joohyun, Maddineni, Sharath, Jha, Shantenu
Concurrency and Computation: Practice and Experience, 2013
[pdf] [bib] : ccpe-2012-ngs


Quantized Water Access to the HIV-1 Protease Active Site as a Proposed Mechanism for Cooperative Mutations in Drug Affinity
Benjamin A. Hall, David W. Wright, Shantenu Jha, Peter V. Coveney
Biochemistry, vol. 51 # 33, 2012
[pdf] [bib] : biochem-2012-jha


Conformational Heterogeneity of the SAM-I Riboswitch Transcriptional ON State: A Chaperone-Like Role for S-Adenosyl Methionine
Wei Huang, Joohyun Kim, Shantenu Jha, Fareed Aboul-ela
Journal of Molecular Biology, vol. 418 # 5, 2012
[link] [pdf] [bib] : jmb-2012-jha

2011


Efficient large-scale Replica-Exchange Simulations on Production Infrastructure
Abhinav Thota, Andre Luckow, Shantenu Jha
Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol. 369 # 1949, 2011
[pdf] [bib] : async_repex11


A Practical and Comprehensive Graduate Course preparing Students for Research involving Scientific Computing
Gabrielle Allen, Werner Benger, Andrei Hutanu, Shantenu Jha, Frank L”offler, Erik Schnetter
Proceedings of the International Conference on Computational Science, ICCS 2011, vol. 4, 2011
[link] [bib] : csc7700-iccs


Energy Landscape Analysis for Regulatory RNA Finding using Scalable Distributed Cyberinfrastructure
Joohyun Kim, Wei Huang, Sharath Maddineni, Fareed Aboul-ela, Shantenu Jha
Concurrency and Computation: Practice and Experience, vol. 23 # 17, 2011
[link] [bib] : ecmls10_ccpe10


Understanding Application-Level Interoperability: Scaling-Out MapReduce over High-Performance Grids and Clouds
Saurabh Sehgal, Miklos Erdelyi, Andre Merzky, Shantenu Jha
Future Generation Computer Systems, vol. 27 # 5, 2011
[pdf] [bib] : fgcs-interop11

2010


Understanding Performance of Distributed Data-Intensive Applications
Chris Miceli, Michael Miceli, Bety Rodriguez-Milla, Shantenu Jha
Royal Society of London Philosophical Transactions Series A, vol. 368, August 2010
[pdf] [bib] : ddia_ptrsa10

2009


Louisiana: a model for advancing regional e-Research through cyberinfrastructure
Daniel S. Katz, Gabrielle Allen, R. Cortez, C. Cruz-Neira, R. Gottumukkala, Z. D. Greenwood, L. Guice, Shantenu Jha, R. Kolluru, Tevfik Kosar, others
Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol. 367 # 1897, 2009
[pdf] [bib] : katz2009louisiana


Using Clouds to Provide Grids with Higher Levels of Abstraction and Explicit Support for Usage Modes
Shantenu Jha, Andre Merzky, Geoffrey Fox
Concurrency and Computation: Practice and Experience, vol. 21 # 8, 2009
[pdf] [bib] : jha2009using


Adaptive Replica-Exchange Simulations
Andre Luckow, Shantenu Jha, Joohyun Kim, Andre Merzky, Bettina Schnor
Royal Society Philosophical Transactions A, jun 2009
[pdf] [bib] : repex_ptrsa

2006


SAGA: A Simple API for Grid applications, High-Level Application Programming on the Grid
Tom Goodale, Shantenu Jha, Harmut Kaiser, Thilo Kielmann, Pascal Kleijer, Gregor von Laszewski, Craig Lee, Andre Merzky, Hrabri Rajic, John Shalf
Computational Methods in Science and Technology, vol. 12 # 1, 2006
[pdf] [bib] : saga_cmst



Standards, White Papers, Technical Reports

2015


From Abstractions to MOD- ELS: MOdels for Distributed and Extremely Large-scale Science
Shantenu Jha, Daniel S. Katz, Matteo Turilli, Jon Weissman
White Paper Submitted to Advanced Scientific Computing and Research, DOE Office of Science, August 2015
[link] [bib] : ascr-wp-2015


owards Scalable Execution Across Multiple XSEDE Resources
Shantenu Jha
, A White Paper submitted to DOE Workshop on Future of Scientific Workflows, 2015
[pdf] [bib] : steering-workflow-1


Implications of the HPC-ABDS High Performance Com- puting Enhanced Apache Big Data Stack for Workflows
Geoffrey Fox, Judy Qiu, Shantnu Jha, Supun Kamburugamuve, Andre Luckow
, A White Paper submitted to DOE Workshop on Future of Scientific Workflows, 2015
[pdf] [bib] : steering-workflow-2


Workshop on Streaming Systems, Draft Report v0.1 (08 Jan 2016)
Geoffrey Fox, Shantenu Jha, Lavanya Ramakrishnan
, NSF DOE Workshop, 2015
[pdf] [bib] : steeringsystems


High-level software frameworks to surmount the challenge of 100x scaling for biomolecul ar simulation science
Shantenu Jha, Peter M. Kasson
, White Paper submitted to NIH-NSF Request for Information (2015) urlhttp://www.nsf.gov/pubs/2016/nsf16008/nsf16008.jsp, 2015
[link] [bib] : nextgen-molsim


Towards Scalable Execution Across Multiple XSEDE Resources
Shantenu Jha
, A White Paper submitted to NSF-ACI, 2015
[pdf] [bib] : nsf-aci-multi-exec

2014


Modeling Distributed Extreme-Scale Applications and Systems
Shantenu Jha, Andre Merzky, Matteo Turilli
Workshop on Modeling & Simulation of Exascale Systems & Applications, August 2014
[link] [bib] : modsim2014

2013


Distributed Exascale Computing: An AIMES Perspective
Shantenu Jha, Andre Merzky, Matteo Turilli, Daniel S. Katz, Jon Weissman
Workshop on Modeling & Simulation of Exascale Systems & Applications, August 2013
[link] [bib] : modsim2013

2012


FutureGrid 2012 Project Challenge: Project 45: Building Scalable, Dynamic and Distributed Applications Using SAGA
Pradeep Kumar Mantha, Sivakarthik Natesan, Melissa Romanus, Sai Saripalli, Ashley Zebrowski
, FutureGrid Project Challenge Award Winner, 2012
[pdf] [bib] : fgpc2012-project-45


SAGA Extension: Information Service Navigator API
Steve Fisher, Antony Wilson
Open Grid Forum, OGF Proposed Recommendation, GFD.195, 2012
[pdf] [bib] : ogf-gfd-isn

2011


SAGA Extension: Message API
Andre Merzky
Open Grid Forum, OGF Proposed Recommendation, GFD.178, 2011
[pdf] [bib] : ogf-gfd-msg


SAGA Extension: Advert API
Andre Merzky
Open Grid Forum, OGF Proposed Recommendation, GFD.177, 2011
[pdf] [bib] : ogf-gfd-advert


Survey and Analysis of Production Distributed Computing Infrastructures (CI-TR-7-0811)
Daniel S. Katz, Shantenu Jha, Manish Parashar, Omer F. Rana, Jon Weissman
Computation Institute, University of Chicago & Argonne National Laboratory, 2011
[pdf] [bib] : dpa-pdci-tr

2008


SAGA Extension: Checkpoint and Recovery API (CPR)
Andre Merzky, Andre Luckow, Derek Simmel
Open Grid Forum, Draft for an OGF Proposed Recommendation Document, 2008
[pdf] [bib] : ogf-gfd-cpr

2007


A Simple API for Grid Applications (SAGA)
Tom Goodale, Shantenu Jha, Hartmut Kaiser, Thilo Kielmann, Pascal Kleijer, Andre Merzky, John Shalf, Christopher Smith
Open Grid Forum, OGF Recommendation, GFD.90, 2007
[pdf] [bib] : ogf-gfd-90

2006


A Requirements Analysis for a Simple API for Grid Applications
Shantenu Jha, Andre Merzky
Global Grid Forum, GGF Proposed Recommendation, GFD.71, 2006
[pdf] [bib] : ogf-gfd-uca


A Collection of Use Cases for a Simple API for Grid Applications
Andre Merzky, Shantenu Jha
Global Grid Forum, GGF Proposed Recommendation, GFD.70, 2006
[pdf] [bib] : ogf-gfd-uc



Book Chapters

2000


Understanding Scientific Applications for Cloud Environments
Shantenu Jha, Daniel S. Katz, Andre Luckow, Andre Merzky, Katerina Stamou
Cloud Computing: Principles and Paradigms, March 2011
[pdf] [bib] : ideas



BibTeX

radical_publications.bib